CDS

Accession Number TCMCG015C01417
gbkey CDS
Protein Id XP_027108340.1
Location complement(join(43805634..43806026,43806691..43806849,43807223..43807325,43807426..43807506,43808193..43808269,43808348..43808419,43808520..43808596,43809622..43809682,43810049..43810146,43810809..43810916,43811420..43811700,43811788..43811853,43811962..43812041,43813186..43813358,43813772..43813803,43813927..43814087,43814545..43814709,43814816..43814880,43816003..43816131,43817470..43817576,43818151..43818274,43819053..43819131,43819951..43820050,43820755..43820837,43820981..43821031,43821209..43821688,43822632..43822826))
Gene LOC113728057
GeneID 113728057
Organism Coffea arabica

Protein

Length 1199aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA506972
db_source XM_027252539.1
Definition tRNA ligase 1-like [Coffea arabica]

EGGNOG-MAPPER Annotation

COG_category S
Description atrnl,rnl
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE -
KEGG_ko -
EC -
KEGG_Pathway -
GOs GO:0000003        [VIEW IN EMBL-EBI]
GO:0000278        [VIEW IN EMBL-EBI]
GO:0000281        [VIEW IN EMBL-EBI]
GO:0000394        [VIEW IN EMBL-EBI]
GO:0000910        [VIEW IN EMBL-EBI]
GO:0003006        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0003729        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0003972        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006388        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006399        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0007049        [VIEW IN EMBL-EBI]
GO:0007275        [VIEW IN EMBL-EBI]
GO:0008033        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008356        [VIEW IN EMBL-EBI]
GO:0008380        [VIEW IN EMBL-EBI]
GO:0008452        [VIEW IN EMBL-EBI]
GO:0009790        [VIEW IN EMBL-EBI]
GO:0009791        [VIEW IN EMBL-EBI]
GO:0009793        [VIEW IN EMBL-EBI]
GO:0009966        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010069        [VIEW IN EMBL-EBI]
GO:0010070        [VIEW IN EMBL-EBI]
GO:0010154        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0010646        [VIEW IN EMBL-EBI]
GO:0010928        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016874        [VIEW IN EMBL-EBI]
GO:0016886        [VIEW IN EMBL-EBI]
GO:0022402        [VIEW IN EMBL-EBI]
GO:0022414        [VIEW IN EMBL-EBI]
GO:0023051        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032502        [VIEW IN EMBL-EBI]
GO:0034470        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034660        [VIEW IN EMBL-EBI]
GO:0042245        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048316        [VIEW IN EMBL-EBI]
GO:0048583        [VIEW IN EMBL-EBI]
GO:0048608        [VIEW IN EMBL-EBI]
GO:0048731        [VIEW IN EMBL-EBI]
GO:0048856        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0051301        [VIEW IN EMBL-EBI]
GO:0061458        [VIEW IN EMBL-EBI]
GO:0061640        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0140098        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1903047        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGTTGTCGAGGGGGCTGGTTTCTCAGAGAATATTCTCTGGTTTCACTCTAGCACTCTATTCTCGTTCTTCTTCCTCTTCGCATTATCATTCTTCACCTCATCATCTAATTTCTTCCAGAAGCTTTCTTCTTCTCCGGTCTCGCTCCATCTCTTTCAGCAGCTCACTGGTTCACTCCACCATGCAACGGAAACAGCCAAGGAGTGCAGCTAGAGGACAAAGATGGATAGAGAAGCCAAAATCTGACAGGCCTTCATCAACTGCGAAAGAGGTTTCTTCTGTAGGAGGTGTGGAAGCTGTGACTGATAAATTTAGTTCATTAAGCATTCCTCAAAATGATGGAGAGTCCAGTGTTCCTCCCCCAGATCAACAGTTTGCCGGGGTAGGATTGGTGAACAACAATCCGAGACAGGGCTTTTGGGAGACGAAGTCATATGGAACAACAAGTGGGGCAATGGCTGTAGAAGTTGAAAAAGGACCAGCTGCTCAAGTGGTGGGTCCGGCTCAGGGGGGTGAAGCTCAAGCAGCATCAGGTGGATTAAATAATGCTGTCTTGAGCAAATTGTTTAAGGGTAATTTACTGGACAACTTCACTGTGGACAATTCAACATACTCGCATGCGCAAATAAGAGCTACCTTTTACCCCAAATTTGAAAATGAGAAGTCTGATCATGAGATTAGAGTAAGAATGATAGAGATGGTGTCGAAAGGCTTGGCCACGTTGGAGGTATCACTCAAGCATTCTGGATCTCTTTTCATGTATGCTGGACATGAGGGAGGAGCATATGCTAAGAACAGCTTTGGCAACGTTTACACTGCTGTTGGTGTTTTTGTGCTTGGGAGGACTTTTCACAAGGCATGGGGTGCTCAAGCAACCAAGAAGCAAGCAGAGTTCAATGAATTTCTCAATCGGAATCGCATGTGCATATCAATGGAACTGGTAACTGCTGTACTAGGAGACCATGGACAACGTCCTCGAGAAGATTATGTGGTTGTGACAGCAGTCACAGAATTGGGCATTGGGAGACCAACATTTTATTCTACTCCAGAAATAATAGCTTTTTGCCGGAAGTGGCGTCTTCCAACAAATCATGTCTGGTTGCTCTCCACCAGGAAGTCGGTGACCTCCTTTTTTGCTGCATACGATGCATTGTGTGAAGAAGGAACAGCATCTCCTGTTTGTCAGGCTCTTGACGAAGTTGCAGATATATCTGTTCCAGGATCAATAGACCACATAAAGGTACAAGGCGAAATTTTAGAAGGTCTTGTGGCTCGCATAGTAAGCCATGAAAGTTCAAAAGACATGGAACAAGTTCTAAGGGATTTTCCTTTACCTACTGTGGATGAAGATGCAAAAGATTTAGGAGCTAGCCTGCGAGAAATTTGTGCTGCAAATAGATCTGATGAGAAGCAGCAAATCAAGGCACTTCTGCAGAGCGTTGGCACTTCCTTCTGCCCAAACTATCTGGATTGGTTTGGGAATGAAGGGTCCGACCCACATTCAAGAAATGTTGATCGTTCGGCTCTTACAAAGTTCCTGCAAACACACCCTGCTGATTTTTCTACAATAAAGTTGCAGGAAATGATTCGCTTGATGCGCGAAAACCGCTATCCAGCTGCTTTTAAATTGTACCATAACTATCAAAAGATCAACTCTGTCTCTAGCAATAATCTTCATTTCAAAATGGTGATCCATGTACACAGTGATTCAGCATTTCGGCGATATCAAAAAGAGATGAGGAACAAACCAGGACTGTGGCCACTTTATCGAGGTTTCTTTGTCGACTTAAACTTATTCAAGGCAGACAAGGAAAAGGCTGCTGAAATTGCTGGAACGGAGAAGGGTGCAAAAAAAGTTGATGAGAATAATGGCACTTTCACAAATGAGAGTTTAGCTGATGAAGATGCAAATCTGATGATCAAGTTGAAATTTCTCACATATAAGTTGCGAACCTTTTTGATCAGGAATGGCTTGTCTAATCTCTTTAAAGAAGGTCCATCTGCCTACAAAGCCTACTATTTGAGACAAATGAAGATATGGAATACTTCACCTACAAAGCAAAGGGAATTGAGCAAAATGCTCGATGAATGGGCAGTATACATACGCAGAAAGTATGGACACAAAATGCTGTCTTCTTCTGTATACCTTAGTGAGGCTGAGCCTTTTCTGGAGCAATATGCAAAGCGCAGTCCACAAAATCAAGCTTTGATAGGATCTGCTGGAAACTTAGTAAGATCAGAAGACTTCTTGGCCATTATTGAGGGAGGAAGAGATGAAGAGGGTGACCTTGAGCAAGAGAGGGATGCAGGACCAGTAACTACAGTTAAGGACAGAGTTGCCAAGGATGAGGGCCTCATTGTCTTCTTTCCAGGAATACCTGGTTGTGCAAAATCTGCGCTTTGTAGGGAAATTTTAAATGCCCCTGGAGTCCTTGAGGATGACCGACCAGTTAACACTTTGATGGGTGATCTTATAAAAGGTAGGTATTGGCAGAAGGTTGCTGATGAACGCCGGAGAAAGCCTTATTCGATAATGCTTGCCGACAAGAATGCACCGAACGAGGAAGTTTGGAAACAGATTGAGGACATGTGCCGACGCACCAAAGCTTCTGCAGTTCCGGTCGTACCAGATTCAGAAGGAACCGAATCAAATCCATTTTCACTTGACGCACTTGCTGTTTTCATATATCGAGTGCTTCACCGTGTTAATCATCCGGGGAACCTTGACAAGTCCTCTCCAAATGTTGGCTATGTGTTGCTAATGTTTTACCACCTTTACCAGGGCAAGAGCCGCAAGGAGTTTGAGGCCGAGTTAATTGAACGTTTTGGCTCTCTTGTGAAGATGCCTTTACTGAAGCCTAATAGGTCTCCTCTACCTGTTTCTGTGAGTTCTGTTTTGGAAGAGGGGATAAACCTGTACAAGCTTCACACAAGCAGGCATGGAAGATTGGAGTCAACCAAAGGAACCTATGCAACAGAATGGACTAAATGGGAGAAGGAATTGCGAGAGATTTTATTAAGCAATTCTGAGTACCTTGATTCGGTGCAGGTTCCATTTGAATTTGCTGTCAAGCAAGTCTTGGAACAACTAAAAGCAGTTGCAAAGGGTGAGTATTCAGCACCAGTAACTGAGAAAAGAAGGCTTGGGGCTATTGTATACGCTGCTGTGAGTTTGCCTGTTGCAGAAATCCATCAATTCCTCCAAAGGATAGCTGAGAAGGATCCCGGCATTGAAACCTTCTTCAAGGAGAAAAATCTGAAGGATAGTCTCACAAAAGCTCATGTGACGCTGGCTCACAAGAGAAGTCATGGTGTTACTGCTGTTGCAAATTATGGCTCGTTTCTTAATGAAAGGGTACCTGTGGATATAACTGCGCTACTATTTTCTGGGAAATTGGCAGCATTAGAAGCTCACACAGGCTCGGTAAATGGTGAAAAGATAACTTCTAAAAACCAGTGGCCTCATGTCACATTATGGACTGGTGAAGGAGTTGCAGCCAAAGATGCCAACGCATTGCCACAGTTAGTTACGGAAGGGAAGGCTACTCGTGTAGGGATTGATCCCCCCATCACGATAACTGGCGTCCTGCAATTCTATTAA
Protein:  
MLSRGLVSQRIFSGFTLALYSRSSSSSHYHSSPHHLISSRSFLLLRSRSISFSSSLVHSTMQRKQPRSAARGQRWIEKPKSDRPSSTAKEVSSVGGVEAVTDKFSSLSIPQNDGESSVPPPDQQFAGVGLVNNNPRQGFWETKSYGTTSGAMAVEVEKGPAAQVVGPAQGGEAQAASGGLNNAVLSKLFKGNLLDNFTVDNSTYSHAQIRATFYPKFENEKSDHEIRVRMIEMVSKGLATLEVSLKHSGSLFMYAGHEGGAYAKNSFGNVYTAVGVFVLGRTFHKAWGAQATKKQAEFNEFLNRNRMCISMELVTAVLGDHGQRPREDYVVVTAVTELGIGRPTFYSTPEIIAFCRKWRLPTNHVWLLSTRKSVTSFFAAYDALCEEGTASPVCQALDEVADISVPGSIDHIKVQGEILEGLVARIVSHESSKDMEQVLRDFPLPTVDEDAKDLGASLREICAANRSDEKQQIKALLQSVGTSFCPNYLDWFGNEGSDPHSRNVDRSALTKFLQTHPADFSTIKLQEMIRLMRENRYPAAFKLYHNYQKINSVSSNNLHFKMVIHVHSDSAFRRYQKEMRNKPGLWPLYRGFFVDLNLFKADKEKAAEIAGTEKGAKKVDENNGTFTNESLADEDANLMIKLKFLTYKLRTFLIRNGLSNLFKEGPSAYKAYYLRQMKIWNTSPTKQRELSKMLDEWAVYIRRKYGHKMLSSSVYLSEAEPFLEQYAKRSPQNQALIGSAGNLVRSEDFLAIIEGGRDEEGDLEQERDAGPVTTVKDRVAKDEGLIVFFPGIPGCAKSALCREILNAPGVLEDDRPVNTLMGDLIKGRYWQKVADERRRKPYSIMLADKNAPNEEVWKQIEDMCRRTKASAVPVVPDSEGTESNPFSLDALAVFIYRVLHRVNHPGNLDKSSPNVGYVLLMFYHLYQGKSRKEFEAELIERFGSLVKMPLLKPNRSPLPVSVSSVLEEGINLYKLHTSRHGRLESTKGTYATEWTKWEKELREILLSNSEYLDSVQVPFEFAVKQVLEQLKAVAKGEYSAPVTEKRRLGAIVYAAVSLPVAEIHQFLQRIAEKDPGIETFFKEKNLKDSLTKAHVTLAHKRSHGVTAVANYGSFLNERVPVDITALLFSGKLAALEAHTGSVNGEKITSKNQWPHVTLWTGEGVAAKDANALPQLVTEGKATRVGIDPPITITGVLQFY